GUI Windows + Always On Top

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I have created a massive GUI (for me anyways) which is 3500+ lines spread over 10 includes and just added the AlwaysOnTop function to the GUI [$WS_EX_TOPMOST]

and just discovered (knew but had forgotton that AutoIT) that ALL my popup windows: FileSelectFolder, FileOpenDialog, FileSaveDialog, MsgBox etc... all sit behind the GUI. I know that I need to link them to the GUI by adding the $hwnd eg. MsgBox(0, $title, $text, $timeout, $hwnd) - just wondering if there is another way of achieving this results without having to go through all lines of code and updating each one manually like eg. BitOR($WS_EX_TOPMOST, $WS_EX_TOPMOST_ALLPOPUPS) etc. ?